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1

Evolution in an oncogenic bacterial species with extreme genome plasticity:Helicobacter pyloriEast Asian genomes

Mikihiko Kawai, Yoshikazu Furuta, Koji Yahara, Takeshi Tsuru, Kenshiro Oshima, Naofumi Handa, Noriko Takahashi, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama, Ichizo Kobayashi

Journal:

BMC Microbiology

Year:

2011

Language:

english

File:

PDF, 1.63 MB

english, 2011

2

Whole genome sequencing of meticillin-resistant Staphylococcus aureus

Makoto Kuroda, Toshiko Ohta, Ikuo Uchiyama, Tadashi Baba, Harumi Yuzawa, Ichizo Kobayashi, Longzhu Cui, Akio Oguchi, Ken-ichi Aoki, Yoshimi Nagai, JianQi Lian, Teruyo Ito, Mutsumi Kanamori, Hiroyuki M

Journal:

Year:

2001

Language:

english

File:

PDF, 900 KB

english, 2001

3

Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score

Chiba, Hirokazu, Uchiyama, Ikuo

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.48 MB

english, 2014

4

SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases

Chiba, Hirokazu, Uchiyama, Ikuo

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.36 MB

english, 2017

5

Galvanic Corrosion of Stainless Steel and Al Alloy Anodes for Cathodic Protection in Sodium Chloride Solution

Uchiyama, Ikuo, Sato, Eiichi

Journal:

CORROSION ENGINEERING

Year:

1976

File:

PDF, 1.55 MB

1976

6

Anodic Behavior of Pure Aluminum and Aluminum Alloy Anodes for Cathodic Protection of Stainless Steel in Chloride Solution at Elevated Temperature

Uchiyama, Ikuo, Sato, Eiichi

Journal:

CORROSION ENGINEERING

Year:

1977

Language:

english

File:

PDF, 3.16 MB

english, 1977

7

A simple and practical workflow for genotyping of CRISPRâCas9âbased knockout phenotypes using multiplexed amplicon sequencing

Iida, Midori, Suzuki, Miyuki, Sakane, Yuto, Nishide, Hiroyo, Uchiyama, Ikuo, Yamamoto, Takashi, Suzuki, Kenâichi T., Fujii, Satoshi

Journal:

Year:

2020

File:

PDF, 20.71 MB

2020

8

Helicobacter suis KB1 derived from pig gastric lymphoid follicles induces the formation of gastric lymphoid follicles in mice through the activation of B cells and CD4 positive cells

Koji Yamamoto, Hiroshi Tanaka, Yosuke Nishitani, Shin Nishiumi, Ikuya Miki, Mamoru Takenaka, Kentaro Nobutani, Takuya Mimura, Yahaya Ben Suleiman, Shigeto Mizuno, Mikihiko Kawai, Ikuo Uchiyama, Masaru

Journal:

Microbes and Infection

Year:

2011

Language:

english

File:

PDF, 2.27 MB

english, 2011

9

Construction and analysis of a profile library characterizing groups of structurally known proteins

Atsushi Ogiwara, Ikuo Uchiyama, Toshihisa Takagi, Minoru Kanehisa

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 2.37 MB

english, 1996

10

RD1 region in mycobacterial genome is involved in the induction of necrosis in infected RAW264 cells via mitochondrial membrane damage and ATP depletion

Taijin Kaku, Ikuo Kawamura, Ryosuke Uchiyama, Takeshi Kurenuma, Masao Mitsuyama

Journal:

FEMS Microbiology Letters

Year:

2007

Language:

english

File:

PDF, 332 KB

english, 2007

11

Teratogenicity of Azosemide, a Loop Diuretic, in Rats, Mice and Rabbits

Ikuo HAYASAKA, Kaoru UCHIYAMA, Kazuo MURAKAMI, Zenji KATO, Fumikazu TAMAKI, Tadashi SHIBATA, Tsutomu SUGAWARA, Motohide HAYASHI

Journal:

Congenital Anomalies

Year:

1984

Language:

english

File:

PDF, 804 KB

english, 1984

12

Azosemide-Induced Fetal Wavy Ribs and Their Disappearance after Birth in Rats

Ikuo HAYASAKA, Fumikazu TAMAKI, Kaoru UCHIYAMA, Zenji KATO, Kazuo MURAKAMI

Journal:

Congenital Anomalies

Year:

1985

Language:

english

File:

PDF, 2.32 MB

english, 1985

13

CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes

Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.64 MB

english, 2006

14

Multiple genome alignment for identifying the core structure among moderately related microbial genomes

Journal:

Year:

2008

Language:

english

File:

PDF, 1.71 MB

english, 2008

15

Construction of a Normalized Directionally Cloned cDNA Library from Adult Heart and Analysis of 3040 Clones by Partial Sequencing

Toshihiro Tanaka, Atsushi Ogiwara, Ikuo Uchiyama, Toshihisa Takagi, Yoshio Yazaki, Yusuke Nakamura

Journal:

Year:

1996

Language:

english

File:

PDF, 202 KB

english, 1996

16

Repression of rRNA synthesis induced by disaggregation in Dictyostelium discoideum

Saburo Uchiyama, Koji Okamoto, Ikuo Takeuchi

Journal:

Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis

Year:

1979

Language:

english

File:

PDF, 535 KB

english, 1979

17

How genomes rearrange: Genome comparison within bacteria Neisseria suggests roles for mobile elements in formation of complex genome polymorphisms

Mikihiko Kawai, Keiichiro Nakao, Ikuo Uchiyama, Ichizo Kobayashi

Journal:

Year:

2006

Language:

english

File:

PDF, 1.34 MB

english, 2006

18

Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction–modification genes with large genome polymorphisms

Akito Chinen, Ikuo Uchiyama, Ichizo Kobayashi

Journal:

Year:

2000

Language:

english

File:

PDF, 837 KB

english, 2000

19

Diversity of restriction–modification gene homologues in Helicobacter pylori

Ayaka Nobusato, Ikuo Uchiyama, Ichizo Kobayashi

Journal:

Year:

2000

Language:

english

File:

PDF, 730 KB

english, 2000

20

Shaping the genome – restriction–modification systems as mobile genetic elements

Ichizo Kobayashi, Ayaka Nobusato, Noriko Kobayashi-Takahashi, Ikuo Uchiyama

Journal:

Current Opinion in Genetics & Development

Year:

1999

Language:

english

File:

PDF, 121 KB

english, 1999

21

Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes

Ayaka Nobusato, Ikuo Uchiyama, Seishi Ohashi, Ichizo Kobayashi

Journal:

Year:

2000

Language:

english

File:

PDF, 311 KB

english, 2000

22

Chemical Synthesis, Cloning, and Expression of Genes for Human Somatomedin C (Insulin-like Growth Factor I) and 59Val-Somatomedin C

MINEO NIWA, SUSUMU SATO, YOSHIMASA SAITO, FUMIAKI UCHIYAMA, HIROKI ONO, MITSUO YAMASHITA, TADASHI KITAGUCHI, YUMIKO SHIGA, JOJI NOTANI, HISASHI YAMADA, YOSHINORI ISHII, IKUO UEDA, YASUYUKI TAKAGI

Journal:

Annals of the New York Academy of Sciences

Year:

1986

Language:

english

File:

PDF, 1011 KB

english, 1986

23

Cathepsin L in Bone Marrow-Derived Cells Is Required for Retinal and Choroidal Neovascularization

Noriaki Shimada, Kyoko Ohno-Matsui, Sachiko Iseki, Masato Koike, Yasuo Uchiyama, Jiying Wang, Takeshi Yoshida, Tetsuji Sato, Christoph Peters, Manabu Mochizuki, Ikuo Morita

Journal:

The American Journal of Pathology

Year:

2010

Language:

english

File:

PDF, 1.53 MB

english, 2010

24

Analysis of expressed sequence tags of the water flea Daphnia magna

Watanabe, Hajime, Tatarazako, Norihisa, Oda, Shigeto, Nishide, Hiroyo, Uchiyama, Ikuo, Morita, Masatoshi, Iguchi, Taisen

Journal:

Year:

2005

File:

PDF, 59 KB

2005

25

Molecular impact of juvenile hormone agonists on neonatal Daphnia magna

Toyota, Kenji, Kato, Yasuhiko, Miyakawa, Hitoshi, Yatsu, Ryohei, Mizutani, Takeshi, Ogino, Yukiko, Miyagawa, Shinichi, Watanabe, Hajime, Nishide, Hiroyo, Uchiyama, Ikuo, Tatarazako, Norihisa, Iguchi,

Journal:

Journal of Applied Toxicology

Year:

2014

Language:

english

File:

PDF, 472 KB

english, 2014

26

[IEEE 2007 International Symposium on Computational Intelligence in Robotics and Automation - Jacksonville, FL, USA (2007.06.20-2007.06.23)] 2007 International Symposium on Computational Intelligence in Robotics and Automation - Catheter insertion path reconstruction with autonomous system for endovascular surgery

Villagran, Carlos R. Tercero, Ikeda, Seiichi, Fukuda, Toshio, Sekiyama, Kosuke, Okada, Yuta, Uchiyama, Tomomi, Negoro, Makoto, Takahashi, Ikuo

Year:

2007

Language:

english

File:

PDF, 464 KB

english, 2007

27

Development of New PCR Primers by Comparative Genomics for the Detection of Helicobacter suis in Gastric Biopsy Specimens

Matsui, Hidenori, Takahashi, Tetsufumi, Murayama, Somay Y., Uchiyama, Ikuo, Yamaguchi, Katsushi, Shigenobu, Shuji, Matsumoto, Takehisa, Kawakubo, Masatomo, Horiuchi, Kazuki, Ota, Hiroyoshi, Osaki, Tak

Journal:

Year:

2014

Language:

english

File:

PDF, 2.47 MB

english, 2014

28

Diofenolan induces male offspring production through binding to the juvenile hormone receptor in Daphnia magna

Abe, Ryoko, Toyota, Kenji, Miyakawa, Hitoshi, Watanabe, Haruna, Oka, Tomohiro, Miyagawa, Shinichi, Nishide, Hiroyo, Uchiyama, Ikuo, Tollefsen, Knut Erik, Iguchi, Taisen, Tatarazako, Norihisa

Journal:

Aquatic Toxicology

Year:

2015

Language:

english

File:

PDF, 698 KB

english, 2015

29

Low frequency of endospore-specific genes in subseafloor sedimentary metagenomes

Kawai, Mikihiko, Uchiyama, Ikuo, Takami, Hideto, Inagaki, Fumio

Journal:

Environmental Microbiology Reports

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

30

Birth and death of genes linked to chromosomal inversion

Yoshikazu Furuta, Mikihiko Kawai, Koji Yahara, Noriko Takahashi, Naofumi Handa, Takeshi Tsuru, Kenshiro Oshima, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama, Ichizo Kobayashi and Pat

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

31

Progress in x-ray mask technology at NTT

Oda, Masatoshi, Shimada, Masaru, Tsuchizawa, Tai, Uchiyama, Shingo, Okada, Ikuo, Yoshihara, Hideo

Journal:

Journal of Vacuum Science & Technology B Microelectronics and Nanometer Structures

Year:

1999

Language:

english

File:

PDF, 1.11 MB

english, 1999

32

Construction of a dictionary of sequence motifs that characterize groups of related proteins

Ogiwara, Atsushi, Uchiyama, Ikuo, Seto, Yasuhiko, Kanehisa, Minoru

Journal:

Protein Engineering Design and Selection

Year:

1992

Language:

english

File:

PDF, 661 KB

english, 1992

33

Gnome – an Internet-based sequence analysis tool

Nakai, Kenta, Tokimori, Takeo, Ogiwara, Atsushi, Uchiyama, Ikuo, Niiyama, Toshiyuki

Journal:

Year:

1994

Language:

english

File:

PDF, 2.27 MB

english, 1994

34

Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration

Hayashi, Shinichi, Kawaguchi, Akane, Uchiyama, Ikuo, Kawasumi-Kita, Aiko, Kobayashi, Takuya, Nishide, Hiroyo, Tsutsumi, Rio, Tsuru, Kazuhiko, Inoue, Takeshi, Ogino, Hajime, Agata, Kiyokazu, Tamura, Ko

Journal:

Developmental Biology

Year:

2015

Language:

english

File:

PDF, 4.33 MB

english, 2015

35

Genome-wide survey of codons under diversifying selection in a highly recombining bacterial species, Helicobacter pylori

Yahara, Koji, Furuta, Yoshikazu, Morimoto, Shinpei, Kikutake, Chie, Komukai, Sho, Matelska, Dorota, Dunin-Horkawicz, Stanisław, Bujnicki, Janusz M., Uchiyama, Ikuo, Kobayashi, Ichizo

Journal:

Year:

2016

Language:

english

File:

PDF, 544 KB

english, 2016

36

The Orthology Ontology: development and applications

Fernández-Breis, Jesualdo Tomás, Chiba, Hirokazu, Legaz-García, María del Carmen, Uchiyama, Ikuo

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

37

Protection of spores from ultraviolet-C irradiation by auto-fluorescent substances in the spore mass of the cellular slime mold Dictyostelium discoideum

Uchiyama, Saburo, Hatakeyama, Ikuo

Journal:

Year:

2014

Language:

english

File:

PDF, 483 KB

english, 2014

38

Pharmacokinetics of Ginsenoside Deglycosylated by Intestinal Bacteria and Its Transformation to Biologically Active Fatty Acid Esters.

HASEGAWA, Hideo, LEE, Ki-Seung, NAGAOKA, Takema, TEZUKA, Yasuhiro, UCHIYAMA, Masamori, KADOTA, Shigetoshi, SAIKI, Ikuo

Journal:

Biological & Pharmaceutical Bulletin

Year:

2000

File:

PDF, 1.31 MB

2000

39

Lysosomes appear as the auto-fluorescent vacuoles in Dictyostelium discoideum cells

Kainuma, Hiroki, Saito, Yuya, Hatakeyama, Ikuo, Omata, Takako A., Uchiyama, Saburo

Journal:

Year:

2016

Language:

english

File:

PDF, 841 KB

english, 2016

40

An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil

Hayatsu, Masahito, Tago, Kanako, Uchiyama, Ikuo, Toyoda, Atsushi, Wang, Yong, Shimomura, Yumi, Okubo, Takashi, Kurisu, Futoshi, Hirono, Yuhei, Nonaka, Kunihiko, Akiyama, Hiroko, Itoh, Takehiko, Takami

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 1.05 MB

english, 2017

41

Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1

Takami, Hideto, Toyoda, Atsushi, Uchiyama, Ikuo, Itoh, Takehiko, Takaki, Yoshihiro, Arai, Wataru, Nishi, Shinro, Kawai, Mikihiko, Shin-ya, Kazuo, Ikeda, Haruo

Journal:

Year:

2017

Language:

english

File:

PDF, 1.30 MB

english, 2017

42

Draft Genome Sequence of Helicobacter suis Strain SNTW101, Isolated from a Japanese Patient with Nodular Gastritis

Matsui, Hidenori, Takahashi, Tetsufumi, Murayama, Somay Y., Uchiyama, Ikuo, Yamaguchi, Katsushi, Shigenobu, Shuji, Suzuki, Masato, Rimbara, Emiko, Shibayama, Keigo, Øverby, Anders, Nakamura, Masahiko

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 146 KB

english, 2016

43

Artificial acceleration of mammalian cell reprogramming by bacterial proteins

Ikeda, Takashi, Uchiyama, Ikuo, Iwasaki, Mio, Sasaki, Tetsuhiko, Nakagawa, Masato, Okita, Keisuke, Masui, Shinji

Journal:

Year:

2017

Language:

english

File:

PDF, 424 KB

english, 2017

44

Corrosion of Al-1100 Used in Heat Exchanger and Al-Zn Alloys Anode for Cathodic Protection

Uchiyama, Ikuo, Sato, Eiichi

Journal:

CORROSION ENGINEERING

Year:

1976

File:

PDF, 3.23 MB

1976

45

The Prevention Potential of Pitting Corrosion Growth and the Form of Pitting Corrosion of Aluminum Alloy in Fresh Water

Uchiyama, Ikuo, Sato, Eiichi

Journal:

CORROSION ENGINEERING

Year:

1976

File:

PDF, 3.19 MB

1976

46

Pitting Corrosion of Aluminum in Sodium Chloride Solution and Analyses of Surface Films

Sato, Eiichi, Sato, Masahisa, Uchiyama, Ikuo

Journal:

CORROSION ENGINEERING

Year:

1975

Language:

english

File:

PDF, 2.89 MB

english, 1975

47

The Prevention Potential of Pitting Corrosion Growth of Aluminum in Fresh Water

Uchiyama, Ikuo, Sato, Eiichi

Journal:

CORROSION ENGINEERING

Year:

1976

File:

PDF, 2.84 MB

1976

48

Photoacoustic Investigation of Aluminum DC Etching Processes.

YOSHIHARA, Sachio, TAKEDA, Kaori, SATO, Eiichi, YONEMORI, Ryuuichi, UCHIYAMA, Ikuo, SAEKI, Sunichi

Journal:

Journal of The Surface Finishing Society of Japan

Year:

1992

File:

PDF, 1.72 MB

1992

49

10.4139/sfj1950.28.374

UCHIYAMA, Ikuo, SATO, Eiichi

Journal:

Journal of the Metal Finishing Society of Japan

Year:

1977

File:

PDF, 1.25 MB

1977

50

10.4139/sfj1950.28.621

ITOI, Yasuhiko, UCHIYAMA, Ikuo, SATO, Eiichi

Journal:

Journal of the Metal Finishing Society of Japan

Year:

1977

File:

PDF, 1.40 MB

1977

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